Things move on, but the science doesn't change. It gets nuanced. Adjusted. Added to. Not chucked out with "proves your theory wrong" type statements
(My theory? Really? I'm an architect).
So, let's look at your link. I followed it from the journalistic report to the
actual published science. It's always worth doing that. It doesn't make quite the same claims as the article, unsurprisingly. It also says this about its methodology:
So, twice a year they filled in a questionnaire.
Can you tell me what you were eating 6 months ago? How many times a week did you have chips? You see, right there is why you can't say "this study trumps that other one". It is perfectly valid to say "what can we learn from this?" and "what are the general trends (it was a huge study in terms of participants and time)?" and so on, but you absolutely cannot directly compare a study in which every single thing participants consumed was administered by the scientists, with a study asking you to fill in a lifestyle questionnaire every 6 months.
There will be a study somewhere, I am certain, comparing what people
claim to have consumed with what they
actually have consumed. If you find it, mentally use that as a correction factor for the results of this study.
I am perfectly happy to accept that calories in / calories out is crude. That there are subtleties at the margins. That not all calories are counted properly, and not all are digested in the same way. This is absolutely not the same as saying, as you did "it's just not correct" and "proves you wrong".