Ignoring the time difference which you mention, and ignoring slightly different routes.
On your first ride, the 16th April.
Climbing average: 18.4mph for 4:28
Flat average: 20.6mph for 23:37
Descent average: 21.3mph for 3:54
On the second ride, 28th May.
Climbing average: 17.6mph for 8:19
Flat average: 21mph for 33:59
Descent average: 19.6mph for 7:18
So any weight benefits are actually only giving you a gain of 0.4mph (assuming identical weather and wind conditions, clothing and same power through the pedals)
For lighter weight wheels, the common claim is better for climbing, yet you're almost 1mph slower on climbs, but you are climbing for longer, so may not be able to sustain the effort.
More aerodynamic wheels should improve much more at higher speeds, yet although you were going downhill for nearly twice the amount of time, you're 1.7mph slower with your aerodynamic wheels.
So, although far, far too many variables to say anything conclusive, there's very little there that corresponds to any of the popular theories of performance benefits from wheels, and even if there was, you would need more than 45 minute time to see any measurable difference. So there's nothing there that supports the wheel being the key factor in any performance improvement.