I recently had a "clonking" noise, rather than a grating noise, which would appear after 2 or 3 miles and gradually got worse with time. I located it to the pedal/crank area and took it to my lbs who diagnosed it to be the bottom bracket. When they took it apart they found the bottom bracket was loose! They tightened it up and no problems with it since! Take it to your lbs - they've got all the right tools and expertise. Let us know how you get on!