Good to see that the new flue is working so well. By opening and closing the bottom vent and the airwash you should now have perfect control of the oxygen supply and hence the combustion temperature. The best advice we were given when choosing our stove was to err on the smaller size so that we would be burning the stove hotter and hence cleaner - nothing looks worse that a big stove shut down and idling and all smoked up. When you light the stove, leave the door ajar for 10 minutes until it's roaring and the combustion temperature is hot enough that the fuel is not smoking, then gradually close it down. The best fire is a bed of glowing embers, made either from smokeless nuggets or small pieces of wood, with a couple of nice dry chunks of hardwood on top, beginning to glow and with the dancing flames of secondary combustion, which is effectively very hot glowing smoke. That takes an hour or so to build but will last all evening if you feed it occasionally.
If you can't shut the stove down enough have another look at that rope seal; it may be admitting air at a corner.