11-speed FDs are very sensitive to the orientation of the two parallel plates vis a vie the chain. Unlike 10-speed where we simply eyeballed it to get them parallel with the chain when it was in a perfect chainline, 11-speed needs to be adjusted so that the tail swings out slightly - say 5 degrees, IIRC. To help you fine-tune this position, the FD has a little grub screw that pushes against the seat tube and works against the clamping force of the main clamp, to get the swing just right. The landing pad of this little screw is the frame itself. The protective plate may or may not help in that regard and indeed, as you say, some frames may even have such a landing pad built in.
Keep your little pad in a drawer in your garage and throw it away in 2019 with other bits and pieces such as brake reach shims and other things you can't remember what they were for but still looks so valuable because they're neatly packed in their own little plastic bag.